Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
| Version: | 2.5.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | aplot,dplyr,ggplot2, grid,ggh4x,readr,tibble,tidyr,ggprism,patchwork,ggplotify,magrittr,progress, stats, methods, grDevices,tidygraph,ggraph, utils |
| Suggests: | Biobase,KEGGREST,ComplexHeatmap,BiocGenerics,testthat (≥3.0.0),ALDEx2,DESeq2,edgeR,GGally,ggdendro,limma, Maaslin2,metagenomeSeq,MicrobiomeStat,SummarizedExperiment,circlize,lefser,fgsea,clusterProfiler,enrichplot,DOSE,ggVennDiagram,UpSetR,igraph |
| Published: | 2025-08-25 |
| DOI: | 10.32614/CRAN.package.ggpicrust2 |
| Author: | Chen Yang [aut, cre], Liangliang Zhang [aut] |
| Maintainer: | Chen Yang <cafferychen7850 at gmail.com> |
| BugReports: | https://github.com/cafferychen777/ggpicrust2/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/cafferychen777/ggpicrust2,https://cafferyang.com/ggpicrust2/ |
| NeedsCompilation: | no |
| CRAN checks: | ggpicrust2 results |