Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.
| Version: | 1.0.0 |
| Depends: | dplyr,edgeR,foreach,ggplot2, R (≥ 2.10),Seurat |
| Imports: | data.table,gtools,harmony,MASS,Matrix,NMF,reshape2,Biobase,mgcv, grDevices,glmGamPoi |
| Suggests: | FARDEEP,reticulate,plotly,DESeq2,knitr,limma,nnls,preprocessCore,rmarkdown,scater,scran,SingleCellExperiment,doFuture,future,sctransform,Linnorm |
| Published: | 2024-03-22 |
| DOI: | 10.32614/CRAN.package.SCdeconR |
| Author: | Yuanhang Liu [aut, cre] |
| Maintainer: | Yuanhang Liu <liu.yuanhang at mayo.edu> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/Liuy12/SCdeconR/,https://liuy12.github.io/SCdeconR/ |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | SCdeconR results |