glossa: User-Friendly 'shiny' App for Bayesian Species DistributionModels
A user-friendly 'shiny' application for Bayesian machine learning analysis of marine species distributions. GLOSSA (Global Ocean Species Spatio-temporal Analysis) uses Bayesian Additive Regression Trees (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) to model species distributions with intuitive workflows for data upload, processing, model fitting, and result visualization. It supports presence-absence and presence-only data (with pseudo-absence generation), spatial thinning, cross-validation, and scenario-based projections. GLOSSA is designed to facilitate ecological research by providing easy-to-use tools for analyzing and visualizing marine species distributions across different spatial and temporal scales. Optionally, pseudo-absences can be generated within the environmental space using the external package 'flexsdm' (not on CRAN), which can be downloaded from <https://github.com/sjevelazco/flexsdm>; this functionality is used conditionally when available and all core features work without it.
| Version: | 1.2.4 |
| Depends: | bs4Dash, R (≥ 4.1.0),shiny |
| Imports: | automap,blockCV,dbarts,dplyr,DT,GeoThinneR,ggplot2,htmltools,leaflet,markdown,mcp,pROC,sf,shinyWidgets,sparkline,svglite,terra,tidyterra,waiter,zip |
| Suggests: | flexsdm,jsonlite,knitr,matrixStats,rmarkdown,testthat (≥ 3.0.0),tidyr,tidyverse |
| Published: | 2025-09-19 |
| DOI: | 10.32614/CRAN.package.glossa |
| Author: | Jorge Mestre-Tomás [aut, cre], Alba Fuster-Alonso [aut] |
| Maintainer: | Jorge Mestre-Tomás <jorge.mestre.tomas at csic.es> |
| BugReports: | https://github.com/iMARES-group/glossa/issues |
| License: | GPL-3 |
| URL: | https://github.com/iMARES-group/glossa,https://iMARES-group.github.io/glossa/ |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | glossa citation info |
| Materials: | NEWS |
| CRAN checks: | glossa results |
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