IDSL.FSA: Fragmentation Spectra Analysis (FSA)
The 'IDSL.FSA' package was designed to annotate standard .msp (mass spectra format) and .mgf (Mascot generic format) files using mass spectral entropy similarity, dot product (cosine) similarity, and normalized Euclidean mass error (NEME) followed by intelligent pre-filtering steps for rapid spectra searches. 'IDSL.FSA' also provides a number of modules to convert and manipulate .msp and .mgf files. The 'IDSL.FSA' workflow was integrated in the 'IDSL.CSA' and 'IDSL.NPA' packages introduced in <doi:10.1021/acs.analchem.3c00376>.
| Version: | 1.2 |
| Depends: | R (≥ 4.0) |
| Suggests: | readxl |
| Published: | 2023-06-29 |
| DOI: | 10.32614/CRAN.package.IDSL.FSA |
| Author: | Sadjad Fakouri-Baygi [aut], Dinesh Barupal [cre, aut] |
| Maintainer: | Dinesh Barupal <dinesh.barupal at mssm.edu> |
| BugReports: | https://github.com/idslme/idsl.fsa/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/idslme/idsl.fsa |
| NeedsCompilation: | no |
| Citation: | IDSL.FSA citation info |
| CRAN checks: | IDSL.FSA results |
Documentation:
| Reference manual: | IDSL.FSA.html ,IDSL.FSA.pdf |
Downloads:
| Package source: | IDSL.FSA_1.2.tar.gz |
| Windows binaries: | r-devel:IDSL.FSA_1.2.zip, r-release:IDSL.FSA_1.2.zip, r-oldrel:IDSL.FSA_1.2.zip |
| macOS binaries: | r-release (arm64):IDSL.FSA_1.2.tgz, r-oldrel (arm64):IDSL.FSA_1.2.tgz, r-release (x86_64):IDSL.FSA_1.2.tgz, r-oldrel (x86_64):IDSL.FSA_1.2.tgz |
| Old sources: | IDSL.FSA archive |
Reverse dependencies:
| Reverse imports: | IDSL.CSA,IDSL.NPA |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=IDSL.FSAto link to this page.