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Rnaught: Estimate the Basic Reproduction Number (R0)

A collection of methods for estimating the basic reproduction number (R0) of infectious diseases. Features a web application to interface with the estimators. Uses the models from: Fisman et al. (2013) <doi:10.1371/journal.pone.0083622>, Bettencourt and Ribeiro (2008) <doi:10.1371/journal.pone.0002185>, and White and Pagano (2008) <doi:10.1002/sim.3136>. Includes datasets for Canadian national and provincial COVID-19 case counts provided by Berry et al. (2021) <doi:10.1038/s41597-021-00955-2>.

Version:0.1.0
Depends:R (≥ 2.10)
Imports:stats, utils
Suggests:knitr,rmarkdown,shiny,bslib,DT,plotly,testthat (≥3.0.0)
Published:2025-09-02
DOI:10.32614/CRAN.package.Rnaught
Author:Naeem Model [aut, cph, cre], Sawitree Boonpatcharanon [aut, cph], Jane Heffernan [aut, cph], Hanna Jankowski [aut, cph], Tatiana Krikella [aut, cph], Kseniia Lipikhin [ctb, cph]
Maintainer:Naeem Model <me at nmode.ca>
BugReports:https://github.com/MI2YorkU/Rnaught/issues
License:AGPL (≥ 3)
URL:https://mi2yorku.github.io/Rnaught/,https://github.com/MI2YorkU/Rnaught
NeedsCompilation:no
Citation:Rnaught citation info
Materials:README,NEWS
CRAN checks:Rnaught results

Documentation:

Reference manual:Rnaught.html ,Rnaught.pdf
Vignettes:Introduction to Rnaught (source,R code)
Sequential Bayes: Utilizing the Posterior Distribution (source,R code)
White and Pagano: Utilizing the Serial Distribution (source,R code)

Downloads:

Package source: Rnaught_0.1.0.tar.gz
Windows binaries: r-devel:Rnaught_0.1.0.zip, r-release:Rnaught_0.1.0.zip, r-oldrel:Rnaught_0.1.0.zip
macOS binaries: r-release (arm64):Rnaught_0.1.0.tgz, r-oldrel (arm64):Rnaught_0.1.0.tgz, r-release (x86_64):Rnaught_0.1.0.tgz, r-oldrel (x86_64):Rnaught_0.1.0.tgz

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=Rnaughtto link to this page.


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