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deeptime 2.3.1

Bug fixes:

• Fixed behavior of thereverse argument forcoord_geo_radial() for ggplot2 4.0.0 and up (#96)

Deprecation:

• Soft deprecated thedirection argument ofcoord_geo_radial() in favor of thereverseargument that was added in deeptime 2.2.0
• Soft deprecated ther_axis_inside argumentcoord_geo_radial() in favor of the newr.axis.inside argument to maintain parity withggplot2::coord_radial()
• Soft deprecated therotate_angle argumentcoord_geo_radial() in favor of the newrotate.angle argument to maintain parity withggplot2::coord_radial()

deeptime 2.3.0

This new minor version of deeptime includes a small number of newfeatures and some minor housekeeping.

New features:

• Thepos argument forcoord_geo() is nowrecycled whendat is a list, removing the need for repeatedpos values when adding multiple time scales to the sameside (#86)
• Added built-in datasetfgdc_names which includes FGDCpattern codes and verbatim names for named patterns
• Addedfgdc_dict() which can be used to generate alabeling dictionary for FGDC pattern codes (#79)
• Added an optional theme element(deeptime.scale.background) to customize the background ofthe time scale area incoord_geo() (#87)

Deprecation:

• RemovedgetScaleData().
• Advanced the deprecation ofgggeo_scale(). Thisfunction has been fully deprecated from deeptime in favor ofcoord_geo().

Miscellaneous:

• Updated citation information for the package (#89)
• Updated package logo to reflect the recent inclusion of patterns(#90)
• Added contribution docs (#91)

deeptime 2.2.0

This new minor version of deeptime introduces several new featuresand bug fixes. It also is compatible with version 4 of ggplot2.

New features:

• Addedgeom_text_phylo() for adding node/tip labels tophylogenies when usingcoord_geo_radial()
• Updated built-in timescales to 2024/12 version of GTS
• Removed the defaults for thecolors argument infacet_grid_color(),facet_wrap_color(),facet_nested_color(), andfacet_nested_wrap_color()
  • Addedfacet_grid_geo(),facet_wrap_geo(),facet_nested_geo(), andfacet_nested_wrap_geo() which now serve as aliases forthese functions with their original defaults (#81)
• Added legends to the examples in the “Plottinggeological/stratigraphical patterns” vignette (#78)
• Added facetting examples to the “Plotting temporal data” vignette(#80)

Deprecation:

• Advanced the deprecation ofcoord_geo_polar(). Use ofthis function will result in a warning. This function will be removed ina future version of deeptime.
• Advanced the deprecation ofgetScaleData(). Thisfunction has been fully deprecated from deeptime in favor ofget_scale_data().

Bug fixes:

• Fixedgtable_frame2() andggarrange2() forplots that usetheme_void() (#74)
• Fixeddisparity_through_time() for rare edge cases(#71)
• UpdatedGeomPointsRange to use the aesthetic defaultsfromggplot2::GeomPointrange
• UpdatedGeomTextPhylo to use the aesthetic defaultsfromggplot2::GeomText

deeptime 2.1.0

This new minor version of deeptime introduces several new featuresand bug fixes.

New features:

• Added default label color values to all built-in data as a newlab_color column
  • The label colors are either white or black, whichever has bettercontrast with the background color based onrecommendationsby the International Telecommunication Union
• get_scale_data() now returns label colors (as above)for Macrostrat timescales
• Varying strip label colors can now be set with thelab_colors argument infacet_wrap_color() andfacet_grid_color() (#68)
  • By default, the strip label colors are set to white or black (asabove)
• Addedfacet_nested_color() andfacet_nested_wrap_color() to plot nested faceted plots withcolored strips (#55)
• get_scale_data() documentation now lists the availableMacrostrat timescales (#69)
• get_scale_data() now supports partial matching toMacrostrat timescales (e.g.,get_scale_data("mammal") willretrieve the “North American land mammal ages” timescale)

Notable changes:

• The FGDC pattern data added in deeptime 2.0.0 has been moved to anew data R package calleddeeptimedata to reduce the sizeof the deeptime package and the footprint of future deeptimeupdates

Bug fixes:

• Fixed importing some functions fromggplot2 forcoord_geo_radial() andcoord_geo_polar()

deeptime 2.0.0

deeptime now requires ggplot2 version 3.5.0 orhigher.
This new major version of deeptime includes several new features:

• Added FGDC/USGS geologic patterns to internal data (#52)
• Added functions to retrieve and plot FGDC/USGS geologic patterns(#52)
• Added functions to use FGDC/USGS patterns as ggplot2 fills or withtheggpattern package (see new vignette) (#52)
• Added thetrue_colors option toget_scale_data(), which, when set toFALSE,can be used to retrieve the custom Macrostrat colors that werepreviously in the built-in datasets (#62)
• Updated built-in timescales to 2023/06 version of GTS
• Added option tocoord_geo() to abbreviate intervallabels based on only the intervals that are being plotted (#64)
• Addedguide_geo() as an alternative tocoord_geo(), mostly for use with radial plots (#53)

Bug fixes:

• Fixed the built-in timescale datasets to have true CGMP colors forthe Precambrian (#62)

Notable changes:

• Thephytools package is no longer required to installdeeptime but is required to use thegeom_phylomorpho() function
• Thegeomtextpath package is no longer required toinstalldeeptime but is required to add labels with thecoord_geo_polar() orcoord_geo_radial()functions
• Thegggeo_scale_old() function has been fullydeprecated

deeptime 1.1.1

deeptime now requires rlang version 1.1.0 or higher. This patchversion includes several bug fixes:

• Fixed several cases where vignette and documentation building and/orunit testing would fail when the Macrostrat API was down
• Fixedcoord_geo_polar() andcoord_geo_radial() when the r-axis has expansion (#60)
• Improved argument type checking and error handling across the entirepackage

deeptime 1.1.0

deeptime now requires ggplot2 version 3.4.0 or higher. This versionintroduces several new features and bug fixes:

• Addedgeom_points_range(), a function designed forvisualizing temporal occurrence data
• Addedfacet_grid_color() andfacet_wrap_color() for changing strip background colors(#50)
• Addedcoord_geo_radial(), an enhanced version ofcoord_geo_polar() (only works with ggplot2 version 3.5.0and higher) (#56)
• Addedfamily andfontface arguments tocoord_geo()
• Added the ability to include interval labels withcoord_geo_polar() (#48)
• Fixed the interaction betweencoord_geo() andggsave() (#49)
• Fixedsize = "auto" whencenter_end_labels = TRUE incoord_geo()
• Updated several functions to work with ggplot2 version 3.5.0

Notable changes:

• The names for the theme elements that are used forcoord_geo_polar() are now prepended with “deeptime.” (e.g.,deeptime.axis.line.r) (#51)
• ggplot2 version 3.5.0 has broken several edge cases ofcoord_trans_xy(). See the documentation for more details.This will be fixed in a future deeptime release.

deeptime 1.0.1

• Fixed the bounds of the Kungurian stage in the built-in stagesdata
• Updated License to GPL >= 3
• Changed tidyverse to dplyr and magrittr in Suggests andvignettes

deeptime 1.0.0

• Updated built-in timescales to 2022/10 version of GTS
• Added a geom for making phylomorphospaces(geom_phylomorpho())
• Added vignettes
• RenamedgetScaleData() toget_scale_data()
• Soft deprecatedgggeo_scale() andgggeo_scale_old()

deeptime 0.3.0

deeptime now requires ggplot2 version 3.3.0 or higher. Several newfeatures and fixed compatibility with various ggplot2 versions.

• Addedcoord_geo_polar(), for adding timescales to polarplots (#33)
• Added color and fill discrete scales that use the GTS colors(#43)
• Fixedcoord_geo_polar() andcoord_trans_xy() for ggplot2 version 3.4.0 (#44)
• Fixedcoord_geo() for ggplot2 version 3.4.0
• Added tests for both ggplot2 version 3.3.6 and 3.4.0
• Removed uses ofgetFromNamespace() (#45)

deeptime 0.2.3

• Updated built-in timescales to 2022/02 version of GTS
• Better name handling and documentation forgetScaleData() (#42)

deeptime 0.2.2

• Skip tests when suggested packages are unavailable
• Added the ability to specify label color (#40)

deeptime 0.2.1

Updated built-in timescales

• Updated the built-in timescales using the Macrostrat API (#39)
• Fixed CRAN checks when ggtree is missing (#38)

deeptime 0.2.0

Several new features and bug fixes.

• coord_geo() now works with discrete axes (#32 and #35)
• Fixed a bug that prevented the use of custom interval data
• Added option to use ggfittext to automatically resize labels(#19)
• Addedcoord_trans_flip() (#20)
• Fixed axis labels forcoord_trans_xy() (#36)
• Added tests with testthat (#34)

deeptime 0.1.0

First minor release (released on CRAN!)

• Fixed ability to use text transformations (fromscales)incoord_geo() (#30)
• Added automatic R CMD check Github Actions
• Fixed S3 method consistency and other R CMD check warnings andnotes
• Fixedcoord_geo() when axis breaks were reversed orNULL (#23 and #29)
• Added packages from examples and README toSuggests

deeptime 0.0.6

Several bug fixes and minor features.

• Added ability to specify a layout forggarrange2()(#21)
• Added ability to center labels for time intervals that are broken byaxis limits (#18)
• Fixedgggeo_scale() forggplot2>=3.3.0(#22)
• Replaced README examples with examples using real data (#28)
• Fixed using first letters for thepos argument
• Fixed label order (#26)
• Switched from Travis to Github Actions (#27)
• Fixed handling of axis tick labels for coord_trans_xy (#31)

deeptime 0.0.5

Addedcoord_geo(), which is a coordinate system forggplot2 that allows for adding highly customized timescalestoggplot objects. Bothgggeo_scale() andgggeo_scale_old are preserved but will receive notably lessmaintenance moving forward.

• Updated examples and documentation to usecoord_geo()
• Addedcoord_trans_xy(), which is a coordinate systemforggplot2 that is similar tocoord_trans()but allows for 2-dimensional transformations
• Addeddisparity_through_time() which allows forplotting 2-dimensional data across a 3rd dimension (usinglattice)

deeptime 0.0.4

ggarrange2() now acceptsgeo_scale objectsand other grobified ggplots

• Fixed missing axes and axis titles

deeptime 0.0.3

Minor release for bug fixes

• Added options to customize borders and line width
• Fixed abbreviations for stages named “Series X” (#9)
• Fixed scale when x-axis crosses 0 (#10, #12)
• Preserve margins of original plots (#13)
• Fixed scale for plots with multiple panels

deeptime 0.0.2

Complete redesign ofgggeo_scale() that adds the scaleoutside of the plotting space usinggtable. The old versionofgggeo_scale() is preserved asgggeo_scale_old().

• Can now pull timescales from the Macrostrat API (#8)

deeptime 0.0.1

First full release. Adds scale onto the bottom of a ggplot.

• Depends on R>3.4 (#1)
• Fixed adding scales to faceted plots (#2)
• Added timescale data from PBDB API (#3)
• Fixed the use of ggtree when a geom has its own data (#5)
• Fixed the stacking of multiple scales (#6)
• Fixed documentation spelling (#7)