rentrez: 'Entrez' in R
Provides an R interface to the NCBI's 'EUtils' API, allowing users to search databases like 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and 'PubMed' <https://pubmed.ncbi.nlm.nih.gov/>, process the results of those searches and pull data into their R sessions.
| Version: | 1.2.4 |
| Depends: | R (≥ 2.6.0) |
| Imports: | XML,httr (≥ 0.5),jsonlite (≥ 0.9) |
| Suggests: | testthat,knitr,rmarkdown |
| Published: | 2025-06-11 |
| DOI: | 10.32614/CRAN.package.rentrez |
| Author: | David Winter [aut, cre], Scott Chamberlain [ctb], Han Guangchun [ctb] |
| Maintainer: | David Winter <david.winter at gmail.com> |
| BugReports: | https://github.com/ropensci/rentrez/issues/ |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/ropensci/rentrez/ |
| NeedsCompilation: | no |
| Citation: | rentrez citation info |
| Materials: | NEWS |
| CRAN checks: | rentrez results |
Documentation:
| Reference manual: | rentrez.html ,rentrez.pdf |
| Vignettes: | Rentrez Tutorial (source,R code) |
Downloads:
| Package source: | rentrez_1.2.4.tar.gz |
| Windows binaries: | r-devel:rentrez_1.2.4.zip, r-release:rentrez_1.2.4.zip, r-oldrel:rentrez_1.2.4.zip |
| macOS binaries: | r-release (arm64):rentrez_1.2.4.tgz, r-oldrel (arm64):rentrez_1.2.4.tgz, r-release (x86_64):rentrez_1.2.4.tgz, r-oldrel (x86_64):rentrez_1.2.4.tgz |
| Old sources: | rentrez archive |
Reverse dependencies:
| Reverse depends: | Map2NCBI |
| Reverse imports: | animalcules,appreci8R,biolink,covid19.analytics,DeSciDe,fanyi,geneHummus,GEOquery,ginmappeR,ideal,LBDiscover,MACER,PathoStat,pubmedR,puremoe,read.gb,recount,refseqR,restez,rotl |
| Reverse suggests: | BoSSA,idiogramFISH,openalexR,PACVr,scGraphVerse,searchAnalyzeR |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=rentrezto link to this page.