phoenics: Pathways Longitudinal and Differential Analysis in Metabolomics
Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition. The method, described in Guilmineau et al (2025) <doi:10.1186/s12859-025-06118-z> is based on a Principal Component Analysis step and on a linear mixed model. Automatic query of metabolic pathways is also implemented.
| Version: | 0.6 |
| Depends: | R (≥ 4.0.0) |
| Imports: | lme4,blme,tibble,FactoMineR,factoextra,tidyr, stats |
| Suggests: | knitr,KEGGREST |
| Published: | 2025-08-19 |
| DOI: | 10.32614/CRAN.package.phoenics |
| Author: | Camille Guilmineau [aut], Remi Servien [aut, cre], Nathalie Vialaneix [aut] |
| Maintainer: | Remi Servien <remi.servien at inrae.fr> |
| BugReports: | https://forge.inrae.fr/panoramics/phoenics/-/issues |
| License: | GPL-3 |
| URL: | https://forge.inrae.fr/panoramics/phoenics |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | phoenics citation info |
| Materials: | NEWS |
| CRAN checks: | phoenics results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=phoenicsto link to this page.