Movatterモバイル変換

extras 0.8.0

• Added a scalar case tolog_lik_beta_binom() to improvespeed for scalar inputs.
• Add memoization (if memoize package is installed) and data has >800 rows to gain speed from repeated function calls.
• Use a vectorized optimization to improve speed of optimizationrequired for deviance calculation.

extras 0.7.3.9002

• Remove dependency on MASS package so minimum R version can bebrought down to 4.0.0 from 4.3.0.

extras 0.7.3.9001

• Register poissontemplate usage.
• Fix actions.
• Perform upkeep on package.

extras 0.7.3

• Ensure all tests, examples, and vignettes run conditionally forpackages listed in suggests.

extras 0.7.2

• Fix behaviour ofdev_beta_binom() when size <x.

extras 0.7.1

• Refactoredlog_lik_beta_binom() to speed upoptimization required indev_beta_binom().
• Styled all code in package.

extras 0.7.0

• Added sensitivity functions to produce list of new parameters thatvary standard deviations (sens_xxx()).
• Added Skew Normal family of functions (ran_skewnorm(),log_lik_skewnorm(),res_skewnorm(),dev_skewnorm()).
• Added Skew Normal distribution functions (rskewnorm(),dskewnorm(),pskewnorm(),qskewnorm()).
• Addedlog2()<-,log10()<-,ilog2(), andilog10() functions.
• Addedexp2() andexp10() functions.

extras 0.6.1

• Fixed M1mac test

extras 0.6.0

New Features

• Added family of functions for the following distributions

  • xx_gamma()
  • xx_student()
  • xx_beta_binomial()

• Added standardized residuals to residual functions for alldistributions

Bug Fixes

• Exportedpbern(),qbern() andrbern().

Internal

• Fix for dev testthat
• Fix tests for dev waldo

extras 0.5.0

• Added following zero-inflated gamma Poisson functions
  • log_lik_gamma_pois_zi()
  • ran_gamma_pois_zi()
  • dev_gamma_pois_zi()
  • res_gamma_pois_zi() Fixed bugs in
  • dev_binom()
  • dev_pois_zi()
• Set R >= 3.5

extras 0.4.0

• Addedlog_odds() andlog_odds()<-.
• Addeddbern(),pbern(),qbern(),rbern().

extras 0.3.0

Added

• Added the following functions
• step() R version of JAGS function.
• ilog().
• inv_logit().
• inv_odds() andodds()<-.
• odds_ratio2() andlog_odds_ratio2().
• proportional_change(),proportional_difference().
• ran_pois_zi(),log_lik_pois_zi(),res_pois_zi() anddev_pois_zi().
• pzeros() to calculate proportion of zeros in a numericobject.

Modifications

• res_xx() functions now return data (actual orsimulated) iftype = 'data'.

Bug Fixes

• Fixed normal and log-normal deviances which were out by a factor of2 and 1.41 respectively.

extras 0.2.0

Added

Functions

• Added the following function families
  • ran_xx() (random samples)
  • log_lik_xx() (log-likelihood)
  • dev_xx() (deviances)
  • res_xx() (residuals)

for the following distributions -_bern, (Bernoulli), -_binom (binomial) -_pois (Poisson) -_norm (normal) -_lnorm (log-normal) -_gamma (gamma) -_gamma_pois(gamma-Poisson)

• Addedodds(),odd_ratio() andlog_odds_ratio() to calculate odds, odds ratio and log oddsratio.
• Added moments functionsxtr_mean(),xtr_sd(),variance(),skewness()andkurtosis().
• Addedxtr_median() to calculate the median.
• Addedinvlogit() to calculate the inverse logistictransform.
• Addedfabs() to calculate the absolute value of x. Usedin TMB as replacement forabs().
• Addedzeros() function to sum number of 0 values in anumeric (or MCMC object).

Arguments

• Addedthreshold = 0 argument topvalue()andsvalue().
• Addedna_rm = FALSE argument tolower(),upper(),pvalue(),svalue() andzscore().

Deprecated

• Soft-deprecatedas_list_unnamed() foras_list().
• Soft-deprecatedpextreme() andsextreme().

extras 0.1.0

• Addedchk_indices() andvld_indices() tocheck (validate) if an object is a list of indices ie a vector of one ormore positive integer values.
• Addedpar_pattern() to provide string of regularexpression for a parameter name.
• Addedas_list_unnamed() generic which by default stripsall attributes except names.
• Modifiedchk_pars() andvld_pars() topermit missing values and duplicates.

extras 0.0.1

• Initial submission to CRAN.