Initial release of MixviR
1.) Optional ‘Sublineage’ column can now be included in lineage.mutsfile in explore_mutations() and estimate_lineages() 2.) Sample mutationsfile optionally written by call_mutations() with ‘write.mut.table’ isnow comma-separated instead of tab-separated. 3.) Consistent with 3, ifdata are read in to either estimate_lineages() or explore_mutations()with a ‘read.muts.from’ file, that file now needs to be comma-separated(previously tab-separated). 4.) lineages and sublineages should now beidentified as present if >= the proportion threshold vs just >(use of >= vs > was inconsistent in previous version). 5.) outputof estimate_lineages() has been reformatted slightly and bugs addressedin which some output columns weren’t printed in previous version. 6.)minor bug fix for case of dates (but no lineages.muts) file inexplore_mutations() (removed trailing comma at line 424 of app.R ofv3.3.5) 7.) general code restructuring