HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange MassSpectrometry Data
Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (<doi:10.1093/bioinformatics/btaa587>). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.
| Version: | 1.2.3 |
| Depends: | R (≥ 3.0) |
| Imports: | data.table,dplyr,ggplot2,latex2exp,reshape2,readr,readxl,shiny,tidyr |
| Suggests: | spelling,covr,digest,DT,gridExtra,gsubfn,knitr,pander,renv,rmarkdown,shinycssloaders,shinyhelper,shinyjs,stringr,testthat,vdiffr |
| Published: | 2025-07-04 |
| DOI: | 10.32614/CRAN.package.HaDeX |
| Author: | Weronika Puchala [cre, aut], Michal Burdukiewicz [aut], Dominik Rafacz [ctb] |
| Maintainer: | Weronika Puchala <puchala.weronika at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README,ChangeLog |
| In views: | ChemPhys |
| CRAN checks: | HaDeX results |
Documentation:
Downloads:
| Package source: | HaDeX_1.2.3.tar.gz |
| Windows binaries: | r-devel:HaDeX_1.2.3.zip, r-release:HaDeX_1.2.3.zip, r-oldrel:HaDeX_1.2.3.zip |
| macOS binaries: | r-release (arm64):HaDeX_1.2.3.tgz, r-oldrel (arm64):HaDeX_1.2.3.tgz, r-release (x86_64):HaDeX_1.2.3.tgz, r-oldrel (x86_64):HaDeX_1.2.3.tgz |
| Old sources: | HaDeX archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=HaDeXto link to this page.