Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023) <doi:10.48550/arXiv.2307.13868>. Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.
| Version: | 1.3.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | cdcsis,sva,MatchIt,nnet,dplyr,magrittr,genefilter,BiocParallel, utils |
| Suggests: | tidyr,ggpubr,knitr,rmarkdown, parallel,testthat (≥3.0.0),covr,roxygen2,ks,ggplot2 |
| Published: | 2025-01-07 |
| DOI: | 10.32614/CRAN.package.causalBatch |
| Author: | Eric W. Bridgeford [aut, cre], Michael Powell [ctb], Brian Caffo [ctb], Joshua T. Vogelstein [ctb] |
| Maintainer: | Eric W. Bridgeford <ericwb95 at gmail.com> |
| License: | GPL-3 |
| URL: | https://github.com/neurodata/causal_batch |
| NeedsCompilation: | no |
| Citation: | causalBatch citation info |
| CRAN checks: | causalBatch results |
| Reference manual: | causalBatch.html ,causalBatch.pdf |
| Vignettes: | cb.correct.aipw_ccombat (source,R code) cb.balancing (source,R code) cb.detect.caus_cdcorr (source,R code) cb.simulations (source,R code) cb.correct.matching_ccombat (source,R code) |
| Package source: | causalBatch_1.3.0.tar.gz |
| Windows binaries: | r-devel:causalBatch_1.3.0.zip, r-release:causalBatch_1.3.0.zip, r-oldrel:causalBatch_1.3.0.zip |
| macOS binaries: | r-release (arm64):causalBatch_1.3.0.tgz, r-oldrel (arm64):causalBatch_1.3.0.tgz, r-release (x86_64):causalBatch_1.3.0.tgz, r-oldrel (x86_64):causalBatch_1.3.0.tgz |
| Old sources: | causalBatch archive |
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