Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
| Version: | 1.9.0 |
| Depends: | R (≥ 4.1.0),MSEtool (≥ 3.0.0) |
| Imports: | TMB (≥ 1.9.0),abind,dplyr,gplots, graphics, methods,pbapply,rmarkdown,snowfall, stats, utils,vars |
| LinkingTo: | TMB,RcppEigen |
| Suggests: | caret,corpcor,covr,extraDistr,ggplot2,Gmisc,knitr,mvtnorm,numDeriv,reshape2,shiny,testthat,tmbstan,usethis |
| Published: | 2025-10-21 |
| DOI: | 10.32614/CRAN.package.SAMtool |
| Author: | Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut] |
| Maintainer: | Quang Huynh <quang at bluematterscience.com> |
| BugReports: | https://github.com/Blue-Matter/SAMtool/issues |
| License: | GPL-3 |
| URL: | https://openmse.com,https://samtool.openmse.com,https://github.com/Blue-Matter/SAMtool |
| NeedsCompilation: | yes |
| Materials: | README,NEWS |
| CRAN checks: | SAMtool results |