Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
| Version: | 1.1.2 |
| Depends: | R (≥ 3.1.0) |
| Imports: | reshape2,plyr,dplyr,data.table,ggplot2,Cairo |
| Suggests: | testthat |
| Published: | 2018-06-18 |
| DOI: | 10.32614/CRAN.package.MetaComp |
| Author: | Pavel Senin [aut, cre] |
| Maintainer: | Pavel Senin <senin at hawaii.edu> |
| BugReports: | https://github.com/seninp-bioinfo/MetaComp/issues |
| License: | GPL-2 |
| URL: | https://github.com/seninp-bioinfo/MetaComp |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MetaComp results[issues need fixing before 2025-12-22] |
| Reference manual: | MetaComp.html ,MetaComp.pdf |
| Package source: | MetaComp_1.1.2.tar.gz |
| Windows binaries: | r-devel:MetaComp_1.1.2.zip, r-release:MetaComp_1.1.2.zip, r-oldrel:MetaComp_1.1.2.zip |
| macOS binaries: | r-release (arm64):MetaComp_1.1.2.tgz, r-oldrel (arm64):MetaComp_1.1.2.tgz, r-release (x86_64):MetaComp_1.1.2.tgz, r-oldrel (x86_64):MetaComp_1.1.2.tgz |
| Old sources: | MetaComp archive |
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