scPloidy: Infer Ploidy of Single Cells
Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <https://github.com/fumi-github/scPloidy>.
| Version: | 0.6.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr,GenomicRanges,magrittr,MASS,matrixStats,mixtools,nimble,rlang,Rsamtools,tibble,tidyr, utils |
| Suggests: | gplots,IRanges,knitr,readr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2024-04-28 |
| DOI: | 10.32614/CRAN.package.scPloidy |
| Author: | Fumihiko Takeuchi [aut, cre] |
| Maintainer: | Fumihiko Takeuchi <fumihiko at takeuchi.name> |
| BugReports: | https://github.com/fumi-github/scPloidy/issues |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | scPloidy results |
Documentation:
| Reference manual: | scPloidy.html ,scPloidy.pdf |
| Vignettes: | CNV (source,R code) intro (source,R code) |
Downloads:
| Package source: | scPloidy_0.6.2.tar.gz |
| Windows binaries: | r-devel:scPloidy_0.6.2.zip, r-release:scPloidy_0.6.2.zip, r-oldrel:scPloidy_0.6.2.zip |
| macOS binaries: | r-release (arm64):scPloidy_0.6.2.tgz, r-oldrel (arm64):scPloidy_0.6.2.tgz, r-release (x86_64):scPloidy_0.6.2.tgz, r-oldrel (x86_64):scPloidy_0.6.2.tgz |
| Old sources: | scPloidy archive |
Linking:
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