The Cauchy Process can model pulsed continuous trait evolution on phylogenies. The likelihood is tractable, and is used for parameter inference and ancestral trait reconstruction. See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
| Version: | 1.0.3 |
| Depends: | R (≥ 3.5),ape (≥ 5.5) |
| Imports: | methods,robustbase,phylolm (≥ 2.6.5),nloptr,pracma,foreach,doParallel,HDInterval |
| Suggests: | covr,knitr,rmarkdown,spelling,geiger,testthat (≥ 3.0.0) |
| Published: | 2024-10-01 |
| DOI: | 10.32614/CRAN.package.cauphy |
| Author: | Gilles Didier [aut, cph], Paul Bastide [aut, cre] |
| Maintainer: | Paul Bastide <paul.bastide at cnrs.fr> |
| BugReports: | https://github.com/gilles-didier/cauphy/issues |
| License: | GPL (≥ 3) |
| URL: | https://gilles-didier.github.io/cauphy/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | cauphy citation info |
| Materials: | README,NEWS |
| CRAN checks: | cauphy results |