Cellular cooperation compromises the established method ofcalculating clonogenic activity from limiting dilution assay (LDA) data.This tool provides functions that enable robust analysis in presence orabsence of cellular cooperation. The implemented method incorporates thesame cooperativity module to model the non-linearity associated withcellular cooperation as known from the colony formation assay (Brix et al.(2021) <doi:10.1038/s41596-021-00615-0>: "Analysis of clonogenic growth invitro." Nature protocols).
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Hmisc |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2024-07-17 |
| DOI: | 10.32614/CRAN.package.LDAcoop |
| Author: | Daniel Samaga [cre, aut], Nikko Brix [aut], Benedek Danko [aut], Kirsten Lauber [aut], Horst Zitzelsberger [aut] |
| Maintainer: | Daniel Samaga <daniel.samaga at helmholtz-munich.de> |
| BugReports: | https://github.com/ZytoHMGU/LDAcoop/issues |
| License: | GPL-3 |
| URL: | https://github.com/ZytoHMGU/LDAcoop |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | LDAcoop results |
| Reference manual: | LDAcoop.html ,LDAcoop.pdf |
| Vignettes: | LDAcoop (source,R code) |
| Package source: | LDAcoop_0.1.2.tar.gz |
| Windows binaries: | r-devel:LDAcoop_0.1.2.zip, r-release:LDAcoop_0.1.2.zip, r-oldrel:LDAcoop_0.1.2.zip |
| macOS binaries: | r-release (arm64):LDAcoop_0.1.2.tgz, r-oldrel (arm64):LDAcoop_0.1.2.tgz, r-release (x86_64):LDAcoop_0.1.2.tgz, r-oldrel (x86_64):LDAcoop_0.1.2.tgz |
| Old sources: | LDAcoop archive |
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