Analysis of molecular marker data from model and non-model systems. For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu and colleagues (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multi-point approaches using hidden Markov models.
| Version: | 3.2.2 |
| Depends: | R (≥ 3.6.0) |
| Imports: | ggplot2 (≥ 2.2.1),plotly (≥ 4.7.1),reshape2 (≥ 1.4.1),Rcpp (≥ 0.10.5), graphics, methods, stats, utils, grDevices,smacof,princurve, parallel,dplyr,tidyr,htmlwidgets,ggpubr,RColorBrewer,dendextend,rebus,vcfR (≥ 1.6.0) |
| LinkingTo: | Rcpp (≥ 1.0.0) |
| Suggests: | knitr (≥ 1.10),rmarkdown,testthat,stringr |
| Published: | 2025-05-16 |
| DOI: | 10.32614/CRAN.package.onemap |
| Author: | Gabriel Margarido [aut], Marcelo Mollinari [aut], Cristiane Taniguti [ctb, cre], Getulio Ferreira [ctb], Rodrigo Amadeu [ctb], Jeekin Lau [ctb], Karl Broman [ctb], Katharine Preedy [ctb, cph] (MDS ordering algorithm), Bastian Schiffthaler [ctb, cph] (HMM parallelization), Augusto Garcia [aut, ctb] |
| Maintainer: | Cristiane Taniguti <cht47 at cornell.edu> |
| BugReports: | https://github.com/Cristianetaniguti/onemap/issues |
| License: | GPL-3 |
| URL: | https://github.com/cristianetaniguti/onemap |
| NeedsCompilation: | yes |
| Citation: | onemap citation info |
| Materials: | NEWS |
| In views: | Agriculture |
| CRAN checks: | onemap results[issues need fixing before 2025-12-22] |
| Reference manual: | onemap.html ,onemap.pdf |
| Vignettes: | Inbred Based Populations (source,R code) Introduction to R (source,R code) Outcrossing Populations (source,R code) Overview (source,R code) |
| Package source: | onemap_3.2.2.tar.gz |
| Windows binaries: | r-devel:onemap_3.2.2.zip, r-release:onemap_3.2.2.zip, r-oldrel:onemap_3.2.2.zip |
| macOS binaries: | r-release (arm64):onemap_3.2.2.tgz, r-oldrel (arm64):onemap_3.2.2.tgz, r-release (x86_64):onemap_3.2.2.tgz, r-oldrel (x86_64):onemap_3.2.2.tgz |
| Old sources: | onemap archive |
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