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mFD: Compute and Illustrate the Multiple Facets of FunctionalDiversity

Computing functional traits-based distances between pairs of species for species gathered in assemblages allowing to build several functional spaces. The package allows to compute functional diversity indices assessing the distribution of species (and of their dominance) in a given functional space for each assemblage and the overlap between assemblages in a given functional space, see: Chao et al. (2018) <doi:10.1002/ecm.1343>, Maire et al. (2015) <doi:10.1111/geb.12299>, Mouillot et al. (2013) <doi:10.1016/j.tree.2012.10.004>, Mouillot et al. (2014) <doi:10.1073/pnas.1317625111>, Ricotta and Szeidl (2009) <doi:10.1016/j.tpb.2009.10.001>. Graphical outputs are included. Visit the 'mFD' website for more information, documentation and examples.

Version:1.0.7
Depends:R (≥ 3.5)
Imports:ade4,ape,betapart (≥ 1.5.4),cluster,dendextend,FactoMineR,gawdis,geometry,ggplot2,ggrepel, grid,Hmisc,patchwork,reshape2,rstatix, stats, utils,vegan
Suggests:dplyr (≥ 1.0.6),knitr,magrittr,rmarkdown (≥ 2.6),stringr,tibble,tidyr
Published:2024-02-26
DOI:10.32614/CRAN.package.mFD
Author:Camille MagnevilleORCID iD [aut, cre, cph], Nicolas LoiseauORCID iD [aut], Camille AlbouyORCID iD [aut], Nicolas CasajusORCID iD [aut], Thomas ClaverieORCID iD [aut], Arthur EscalasORCID iD [aut], Fabien LeprieurORCID iD [aut], Eva MaireORCID iD [aut], David MouillotORCID iD [aut], Sebastien VillegerORCID iD [aut]
Maintainer:Camille Magneville <camille.magneville at gmail.com>
BugReports:https://github.com/CmlMagneville/mFD/issues
License:GPL-2
URL:https://cmlmagneville.github.io/mFD/,https://github.com/CmlMagneville/mFD
NeedsCompilation:no
Citation:mFD citation info
Materials:README,NEWS
CRAN checks:mFD results

Documentation:

Reference manual:mFD.html ,mFD.pdf
Vignettes:Compute and Interpret Quality of Functional Spaces (source,R code)
Compute Functional Diversity Hill Indices (source,R code)
Continuous Traits Framework (source,R code)
Customised plots (source,R code)
How to Deal With Functional Entities (source,R code)
mFD: General Workflow (source,R code)

Downloads:

Package source: mFD_1.0.7.tar.gz
Windows binaries: r-devel:mFD_1.0.7.zip, r-release:mFD_1.0.7.zip, r-oldrel:mFD_1.0.7.zip
macOS binaries: r-release (arm64):mFD_1.0.7.tgz, r-oldrel (arm64):mFD_1.0.7.tgz, r-release (x86_64):mFD_1.0.7.tgz, r-oldrel (x86_64):mFD_1.0.7.tgz
Old sources: mFD archive

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