HLAtools: Toolkit for HLA Immunogenomics
A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
| Version: | 1.6.3 |
| Depends: | R (≥ 3.6.0) |
| Imports: | DescTools,dplyr,fmsb,rvest, stats,stringr,tibble, utils,xfun |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2025-07-21 |
| DOI: | 10.32614/CRAN.package.HLAtools |
| Author: | Livia Tran [aut], Ryan Nickens [aut], Leamon Crooms IV [aut], Derek Pappas [aut], Vinh Luu [ctb], Josh Bredeweg [ctb], Steven Mack [aut, cre] |
| Maintainer: | Steven Mack <Steven.Mack at ucsf.edu> |
| License: | GPL (≥ 3) |
| URL: | <https://github.com/sjmack/HLAtools> |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | HLAtools results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=HLAtoolsto link to this page.