STDistance: Spatial Transcriptomics Distance Calculation and Visualization
Analysis of spatial relationships between cell types in spatial transcriptomics data. Spatial proximity is a critical factor in cell-cell communication. The package calculates nearest neighbor distances between specified cell types and provides visualization tools to explore spatial patterns. Applications include studying cell-cell interactions, immune microenvironment characterization, and spatial organization of tissues.
| Version: | 0.6.6 |
| Depends: | R (≥ 4.0.0) |
| Imports: | dplyr,ggplot2,Hmisc,scales, stats,RColorBrewer,tidyr |
| Suggests: | testthat,knitr,rmarkdown |
| Published: | 2025-07-22 |
| DOI: | 10.32614/CRAN.package.STDistance |
| Author: | Zixiang Wang [aut, cre], Lei Yang [aut], Zhaojian Liu [aut] |
| Maintainer: | Zixiang Wang <wangzixiang at sdu.edu.cn> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | STDistance results |
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