For Multi Parent Populations (MPP) Identity By Descend (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. (<doi:10.1007/s00122-021-03919-7>).
| Version: | 1.0.4 |
| Depends: | R (≥ 3.6),statgenGWAS (≥ 1.0.9) |
| Imports: | data.table,foreach,ggplot2,gridExtra,LMMsolver (≥ 1.0.5),rlang,scales,spam,statgenIBD (≥ 1.0.8) |
| Suggests: | rmarkdown,knitr,tinytest |
| Published: | 2025-02-11 |
| DOI: | 10.32614/CRAN.package.statgenMPP |
| Author: | Martin Boer [aut], Wenhao Li [aut], Bart-Jan van Rossum [aut, cre], Fred van Eeuwijk [ctb] |
| Maintainer: | Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| BugReports: | https://github.com/Biometris/statgenMPP/issues |
| License: | GPL (≥ 3) |
| URL: | https://biometris.github.io/statgenMPP/index.html,https://github.com/Biometris/statgenMPP/ |
| NeedsCompilation: | no |
| Citation: | statgenMPP citation info |
| Materials: | README,NEWS |
| In views: | Agriculture |
| CRAN checks: | statgenMPP results |