A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.
| Version: | 1.4.0 |
| Depends: | R (≥ 4.00) |
| Imports: | cli,clustree,data.table,dbscan,dplyr,ggdist,ggplot2,ggpp,gridExtra,gtable,magrittr,patchwork,rlang,scales,tibble,tidyr |
| Suggests: | covr,knitr,rmarkdown,testthat (≥ 3.0.0),umap,vdiffr |
| Published: | 2024-03-31 |
| DOI: | 10.32614/CRAN.package.crosshap |
| Author: | Jacob Marsh [aut, cre], Brady Johnston [aut], Jakob Petereit [aut] |
| Maintainer: | Jacob Marsh <jake.marsh at live.com.au> |
| BugReports: | https://github.com/jacobimarsh/crosshap/issues |
| License: | MIT + fileLICENSE |
| URL: | https://jacobimarsh.github.io/crosshap/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | crosshap results |