To cite the rnetcarto package in publications use:
Doulcier G, Stouffer D (2023).Rnetcarto: Fast Network Modularity and Roles Computation by Simulated Annealing.R package version 0.2.6.
Original articles about functional roles:
Guimera R, Nunes Amaral L (2005).“Functional cartography of complex metabolic networks.”Nature.doi:10.1038/nature03288.
Guimera R, Nunes Amaral L (2005).“Cartography of complex networks: modules and universal roles.”Journal of Statistical Mechanics: Theory and Experiment.doi:10.1088/1742-5468/2005/02/P02001.
For the bipartite modularity definition for unweighted bipartite networks use:
Guimera R, Sales-Pardo M, Nunes Amaral L (2007).“Module identification in bipartite and directed networks.”Physical Review E.doi:10.1103/PhysRevE.76.036102.
For the bipartite modularity definition for weighted bipartite networks use:
Stouffer D, Sales-Pardo M, Sirer M, Bascompte J (2012).“Evolutionary Conservation of Species' Roles in Food Webs.”Science.doi:10.1126/science.1216556, (Supl. materials).
Corresponding BibTeX entries:
@Manual{, title = {Rnetcarto: Fast Network Modularity and Roles Computation by Simulated Annealing}, author = {Guilhem Doulcier and Daniel B. Stouffer}, year = {2023}, note = {R package version 0.2.6}, } @Article{, title = {Functional cartography of complex metabolic networks}, author = {Roger Guimera and Luis A. {Nunes Amaral}}, year = {2005}, journal = {Nature}, doi = {10.1038/nature03288}, } @Article{, title = {Cartography of complex networks: modules and universal roles}, author = {Roger Guimera and Luis A. {Nunes Amaral}}, year = {2005}, journal = {Journal of Statistical Mechanics: Theory and Experiment}, doi = {10.1088/1742-5468/2005/02/P02001}, } @Article{, title = {Module identification in bipartite and directed networks}, author = {Roger Guimera and Marta Sales-Pardo and Luis A. {Nunes Amaral}}, year = {2007}, journal = {Physical Review E}, doi = {10.1103/PhysRevE.76.036102}, } @Article{, title = {Evolutionary {Conservation} of {Species}' {Roles} in {Food} {Webs}}, author = {Daniel B Stouffer and Marta Sales-Pardo and M. Irmak Sirer and Jordi Bascompte}, year = {2012}, journal = {Science}, note = {(Supl. materials)}, doi = {10.1126/science.1216556}, }