pcvr: Plant Phenotyping and Bayesian Statistics
Analyse common types of plant phenotyping data, provide a simplified interfaceto longitudinal growth modeling and select Bayesian statistics,and streamline use of 'PlantCV' output.Several Bayesian methods and reporting guidelines for Bayesian methods are described inKruschke (2018) <doi:10.1177/2515245918771304>,Kruschke (2013) <doi:10.1037/a0029146>, and Kruschke (2021) <doi:10.1038/s41562-021-01177-7>.
| Version: | 1.3.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | FactoMineR,rlang, stats, utils, methods,data.table,ggplot2,ggridges,igraph,jsonlite,lme4,patchwork,extraDistr, parallel,bayestestR,viridis,mgcv,quantreg,nlme, splines,lmeSplines,scales,survival,car |
| Suggests: | knitr,rmarkdown,brms,flexsurv,curl, cmdstanr,rstan,caret,testthat (≥ 3.0.0) |
| Published: | 2025-08-18 |
| DOI: | 10.32614/CRAN.package.pcvr |
| Author: | Josh Sumner [aut, cre], Jeffrey Berry [aut], Noah Fahlgren [rev], Donald Danforth Plant Science Center [cph] |
| Maintainer: | Josh Sumner <jsumner at danforthcenter.org> |
| BugReports: | https://github.com/danforthcenter/pcvr/issues |
| License: | GPL-2 |
| URL: | https://github.com/danforthcenter/pcvr,https://plantcv.org/,https://danforthcenter.github.io/pcvr/ |
| NeedsCompilation: | no |
| Additional_repositories: | https://mc-stan.org/r-packages/ |
| Materials: | README,NEWS |
| CRAN checks: | pcvr results |
Documentation:
| Reference manual: | pcvr.html ,pcvr.pdf |
| Vignettes: | Longitudinal Growth Modeling Options (source,R code) pcvr (source,R code) Root Traits (source,R code) |
Downloads:
| Package source: | pcvr_1.3.1.tar.gz |
| Windows binaries: | r-devel:pcvr_1.3.1.zip, r-release:pcvr_1.3.1.zip, r-oldrel:pcvr_1.3.1.zip |
| macOS binaries: | r-release (arm64):pcvr_1.3.1.tgz, r-oldrel (arm64):pcvr_1.3.1.tgz, r-release (x86_64):pcvr_1.3.1.tgz, r-oldrel (x86_64):pcvr_1.3.1.tgz |
| Old sources: | pcvr archive |
Linking:
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