babelgene: Gene Orthologs for Model Organisms in a Tidy Data Format
Genomic analysis of model organisms frequently requires the use of databases based on human data or making comparisons to patient-derived resources. This requires harmonization of gene names into the same gene space. The 'babelgene' R package converts between human and non-human gene orthologs/homologs. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 <doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007 <doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).
| Version: | 22.9 |
| Depends: | R (≥ 3.4) |
| Imports: | dplyr, methods,rlang |
| Suggests: | covr,knitr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2022-09-29 |
| DOI: | 10.32614/CRAN.package.babelgene |
| Author: | Igor Dolgalev [aut, cre] |
| Maintainer: | Igor Dolgalev <igor.dolgalev at nyumc.org> |
| BugReports: | https://github.com/igordot/babelgene/issues |
| License: | MIT + fileLICENSE |
| URL: | https://igordot.github.io/babelgene/ |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| In views: | Omics |
| CRAN checks: | babelgene results |
Documentation:
| Reference manual: | babelgene.html ,babelgene.pdf |
| Vignettes: | Introduction to babelgene (source,R code) |
Downloads:
| Package source: | babelgene_22.9.tar.gz |
| Windows binaries: | r-devel:babelgene_22.9.zip, r-release:babelgene_22.9.zip, r-oldrel:babelgene_22.9.zip |
| macOS binaries: | r-release (arm64):babelgene_22.9.tgz, r-oldrel (arm64):babelgene_22.9.tgz, r-release (x86_64):babelgene_22.9.tgz, r-oldrel (x86_64):babelgene_22.9.tgz |
| Old sources: | babelgene archive |
Reverse dependencies:
| Reverse imports: | msigdbr,orthogene,sparrow |
| Reverse suggests: | TFEA.ChIP |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=babelgeneto link to this page.