admixr: An Interface for Running 'ADMIXTOOLS' Analyses
An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://github.com/dreichlab/admixtools>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.
| Version: | 0.9.2 |
| Depends: | R (≥ 3.6.0) |
| Imports: | dplyr,magrittr,readr,stringr,tibble, stats,rlang, utils |
| Suggests: | glue,ggplot2,testthat,forcats,tidyr,knitr,rmarkdown |
| Published: | 2025-11-22 |
| DOI: | 10.32614/CRAN.package.admixr |
| Author: | Martin Petr [aut, cre] |
| Maintainer: | Martin Petr <contact at bodkan.net> |
| BugReports: | https://github.com/bodkan/admixr/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/bodkan/admixr |
| NeedsCompilation: | no |
| SystemRequirements: | ADMIXTOOLS suite of command-line utilities forpopulation genetics. See<https://github.com/dreichlab/admixtools> for the most recentinstallation instructions and further information. |
| Materials: | README,NEWS |
| CRAN checks: | admixr results |
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