simulate_twoOmicsData()multiomics_demo = "SHOW" provides a ready-to-run two-factortoy example for quick multi-omics walkthroughs.Legacy → standard conversion pipeline Polishedas_multiomics() to reliably upgrade legacysimulate_twoOmicsData() outputs into the current schema(omics, per-omiclist_betas,signal_annotation$features,factor_map, etc.),including:
alpha{n}),delta{n} →beta{n} for omic2,concatenated_datasets back intoomic1/omic2 using counts oromic1_/omic2_ prefixes.Internal helpers made non-exported (with docsscaffolding)%||% for defaults and.is_multiomics_like() for schema checks are now internal,with roxygen headers (no code changes).
Stronger standardization & resilienceAutomatic row/column naming for omics matrices; safer handling ofempty/NA index vectors; improved messages forsample-partition constraints; sturdier concatenated-splitheuristics.
as_multiomics(), and configuring basilisk/reticulatebackends.delta→beta mapping acrossomics.as_multiomics() to standardize them for downstreamworkflows.