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NEWS	R Documentation

News for thepanelPomp package

Changes inpanelPomp version 1.7.0.0

Internal updates forplot warning messages and tests.
Release matching CRAN version 1.7.0.0

Changes inpanelPomp version 1.6.1.0

Modified theplot function to allow subsetting of units. This function works for objects of classpanelPomp,pfilterd.ppomp, andmif2d.ppomp

Changes inpanelPomp version 1.6.0.0

Removed deprecated functions.
Release matching CRAN version 1.6.0.0

Changes inpanelPomp version 1.5.0.2

Created internal functions for in-place modification ofpparamArray within themif2 function. When the number of units and particles is large, this change results in substantial improvements in computational speed by avoiding unecessary memory creation and garbage collection.

Changes inpanelPomp version 1.5.0.1

Removed unused variables.

Changes inpanelPomp version 1.5.0.0

StreamlinedpanelPomp-methods documentation.
AddedpanelMeasles topanelPomp models documentation family.
Fixed redirected link in documentation.

Changes inpanelPomp version 1.4.1.0

Added two new datasets:twentycities anduk_measles. These data contain measles incidence data from 20 UK cities.
Added a newpanelPomp model example:panelMeasles.
Added Aaron Abkemeier as a package contributor.

Changes inpanelPomp version 1.4.0.1

Added Jesse Wheeler as one of the package authors in citation file.

Changes inpanelPomp version 1.4.0.0

Changed package maintainers
Updated package governance file and website
Standardized package version numbering system to four point system.

Changes inpanelPomp version 1.3.1

Fixed broken links in function documentation.

Changes inpanelPomp version 1.3.0

Changed the defaultcooling.type argument in themif2() function to be"geometric" in order to be consistent with thepomp package.
Addedformat argument tocoef.panelPomp method, with optionsc("vector", "list"). This functionality makes thepparams function obsolete, so it has been removed from the package in this version.
Changed thepParams() function name totoParamList().
Modified thetoVectorPparams() function so that it returns a vector instead of adata.frame object with a single row. The name of the function was also changed totoParamVec(), and is a near inverse of thetoParamList() function.
Updated unit tests and documentation.

Changes inpanelPomp version 1.2.0

Change the genericunitlogLik tounitLogLik to match camel-case style of package. The original function is deprecated in this version and will be removed in future updates.
ChangedpanelPomp S4 object slot name fromunit.objects tounit_objects in order to be consistent withpomp pacakge. Corresponding getter and setter methods for this slot have also been changed fromunitobjects() tounit_objects().
Added genericsshared(),shared()<-,specific(), andspecific()<-. These generics provide convinient access to parameters of apanelPomp object, but the setter methods also allow for changing a parameter type between shared and unit-specific.
Added functionrunif_panel_design(), which is useful for generating design matrices for PanelPOMP models.
Minor typo fixes to package and function documentation.

Changes inpanelPomp version 1.1.0.2

Added a type check for theparams arguement of thepfilter function in order to throw more user friendly error.
A more user friendly error is thrown when the user specifies aparameter as both shared and unit specific in themif2 function.
Added amatch.arg call inmif2.internal; this willallow the default option for thecooling.type argument inmif2 to no longer throw an error, and mimics the behaviour of themif2 function in thepomp package.
ThepParams function no longer changes the order of the unitspecific parameter names; this was causing an error because thebarycentric parameter transformation requires that the parametersare adjacent to one another in the parameter vector.
Improved documentation forpanel_logmeanexp.
More robust input checking for thepfilter function withuser friendly error messages.

Changes inpanelPomp version 1.1.0

Improved documentation and tests.

Changes inpanelPomp version 1.0.0

Submitted to CRAN.

Changes inpanelPomp version 0.18.0

Fixed bug infromVectorPparams() to make it a true inverse oftoVectorPparams().
Homogenized documentation; added examples.

Changes inpanelPomp version 0.15.0

New coercion topompList and update to list.
panelGompertzLikelihood replaceskalman_gompertz.R.
expungedpanelPompExample.
Names added to plot;pfilter matches units by name.

Changes inpanelPomp version 0.14.0

Newsimulate function.

Changes inpanelPomp version 0.13.0

NewpanelRandomWalk example.
panelPompExample is now deprecated and will be removed in thenear future.

Changes inpanelPomp version 0.12.0

Newplot method forpanelPomp objects.

Changes inpanelPomp version 0.11.0

Additional functions implementing Kalman filtering to panels and to the Gompertz model.

Changes inpanelPomp version 0.10.2.0

Minor improvements to the interface.
Additional examples:contacts() andpanelGompertz().
The minimum version ofpomp supported is now2.7.

Changes inpanelPomp version 0.9.1

The minimum version ofpomp supported is now2.1. Whilethis is likely to imply substantial changes inpomp objects (on whichpanelPomp objects rely) there are only three fundamental changes thatbreak panelPomp's backwards compatibility:
The first argumentpfilter(object, ...) changes todata.
The first argumentmif2(object, ...) changes todata.
The ‘conv.rec’ method has been deprecated, replaced by the new‘traces’ method.

Changes inpanelPomp version 0.8.3

Improvements to the interface.

Changes inpanelPomp version 0.7

A newconv.rec method.

Changes inpanelPomp version 0.6

Many improvements to the interface.

Changes inpanelPomp version 0.5.6

panelPompExamples() now allows creatingpanelPomp objects that come with the package.
New documentation and tests.

Changes inpanelPomp version 0.5.5

New documentation and tests.

Changes inpanelPomp version 0.5.4

New documentation and tests.

Changes inpanelPomp version 0.5.3

New documentation and additional tests.

Changes inpanelPomp version 0.5

New documentation and additional tests and coverage.

Changes inpanelPomp version 0.4

New tests added.
New methods.
A bug inpfilter andmif2 has been fixed (pomp's default filtering tolerancetol=1e-17 was used instead of values specified by the user). Thanks to Aaron King for finding it.

Changes inpanelPomp version 0.2

New tests added.
Eliminate need to protectrw.sd from being evaluated.

Changes inpanelPomp version 0.1

Unused variable purged.
pPfilter.internal streamlined.
Test for reproducibility of pfilter calculations added.