MetaNet: Network Analysis for Omics Data
Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.
| Version: | 0.2.7 |
| Depends: | R (≥ 4.1.0),igraph (≥ 1.3.5) |
| Imports: | graphics,dplyr,ggplot2 (≥ 3.2.0),ggnewscale,ggrepel, grDevices,magrittr,reshape2, stats,tibble, utils,pcutils (≥ 0.2.7),rlang |
| Suggests: | pheatmap,vegan,stringr,foreach,doSNOW,snow,knitr,rmarkdown,prettydoc,Hmisc,gifski,ggraph,networkD3,ggpmisc,ggtree,treeio,circlize,jsonify,ggpubr,corrplot,philentropy,spatstat.random,spatstat.geom,sf |
| Published: | 2025-06-26 |
| DOI: | 10.32614/CRAN.package.MetaNet |
| Author: | Chen Peng [aut, cre] |
| Maintainer: | Chen Peng <pengchen2001 at zju.edu.cn> |
| BugReports: | https://github.com/Asa12138/MetaNet/issues |
| License: | GPL-3 |
| URL: | https://github.com/Asa12138/MetaNet |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | MetaNet results |
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