Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.
| Version: | 1.1.3 |
| Depends: | R (≥ 3.5.0) |
| Imports: | utils, methods, stats, grDevices,Rcpp,ape,ggplot2,magrittr,visNetwork |
| LinkingTo: | Rcpp |
| Suggests: | coda,microbenchmark,testthat,knitr,rmarkdown,igraph,epicontacts,adegenet |
| Published: | 2022-05-23 |
| DOI: | 10.32614/CRAN.package.outbreaker2 |
| Author: | Thibaut Jombart [aut], Finlay Campbell [aut, cre], Rich Fitzjohn [aut], Gerry Tonkin-Hill [ctb], Kristjan Eldjarn [ctb], Alexis Robert [ctb] |
| Maintainer: | Finlay Campbell <finlaycampbell93 at gmail.com> |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Citation: | outbreaker2 citation info |
| Materials: | README,NEWS |
| In views: | AnomalyDetection,Epidemiology |
| CRAN checks: | outbreaker2 results[issues need fixing before 2025-12-18] |