cellGeometry: Geometric Single Cell Deconvolution
Deconvolution of bulk RNA-Sequencing data into proportions of cells based on a reference single-cell RNA-Sequencing dataset using high-dimensional geometric methodology.
| Version: | 0.5.7 |
| Depends: | R (≥ 4.1.0) |
| Imports: | circlize,ComplexHeatmap,DelayedArray,dplyr,ensembldb,ggplot2,ggrepel, grid,gtools,matrixStats,mcprogress, parallel,pbmcapply,rlang,scales |
| Suggests: | future.apply,ggsci,knitr,plotly,Rfast2,rmarkdown,seriation |
| Published: | 2025-12-11 |
| DOI: | 10.32614/CRAN.package.cellGeometry |
| Author: | Myles Lewis [aut, cre], Rachel Lau [ctb] |
| Maintainer: | Myles Lewis <myles.lewis at qmul.ac.uk> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/myles-lewis/cellGeometry |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | cellGeometry results |
Documentation:
| Reference manual: | cellGeometry.html ,cellGeometry.pdf |
| Vignettes: | Deconvolution with the brain atlas (source,R code) cellGeometry quickstart (source,R code) |
Downloads:
| Package source: | cellGeometry_0.5.7.tar.gz |
| Windows binaries: | r-devel:cellGeometry_0.5.7.zip, r-release:cellGeometry_0.5.7.zip, r-oldrel:cellGeometry_0.5.7.zip |
| macOS binaries: | r-release (arm64):cellGeometry_0.5.7.tgz, r-oldrel (arm64):cellGeometry_0.5.7.tgz, r-release (x86_64):cellGeometry_0.5.7.tgz, r-oldrel (x86_64):cellGeometry_0.5.7.tgz |
| Old sources: | cellGeometry archive |
Linking:
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