apex: Phylogenetic Methods for Multiple Gene Data
Toolkit for the analysis of multiple gene data (Jombart et al. 2017) <doi:10.1111/1755-0998.12567>. 'apex' implements the new S4 classes 'multidna', 'multiphyDat' and associated methods to handle aligned DNA sequences from multiple genes.
| Version: | 1.0.7 |
| Depends: | R (≥ 3.1.3), methods,ape,phangorn |
| Imports: | utils, graphics, stats,adegenet |
| Suggests: | testthat,knitr,rmarkdown |
| Published: | 2025-07-24 |
| DOI: | 10.32614/CRAN.package.apex |
| Author: | Klaus Schliep [aut, cre], Thibaut Jombart [aut], Zhian Namir Kamvar [aut], Eric Archer [aut], Rebecca Harris [aut] |
| Maintainer: | Klaus Schliep <klaus.schliep at gmail.com> |
| BugReports: | https://github.com/thibautjombart/apex/issues |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/thibautjombart/apex |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| In views: | Phylogenetics |
| CRAN checks: | apex results |
Documentation:
| Reference manual: | apex.html ,apex.pdf |
| Vignettes: | apex: Phylogenetic Methods for Multiple Gene Data. (source,R code) |
Downloads:
| Package source: | apex_1.0.7.tar.gz |
| Windows binaries: | r-devel:apex_1.0.7.zip, r-release:apex_1.0.7.zip, r-oldrel:apex_1.0.7.zip |
| macOS binaries: | r-release (arm64):apex_1.0.7.tgz, r-oldrel (arm64):apex_1.0.7.tgz, r-release (x86_64):apex_1.0.7.tgz, r-oldrel (x86_64):apex_1.0.7.tgz |
| Old sources: | apex archive |
Reverse dependencies:
| Reverse suggests: | phangorn |
Linking:
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