Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.12688/f1000research.21642.1>.
| Version: | 2.2 |
| Depends: | R (≥ 3.2) |
| Imports: | ggplot2,igraph,Matrix,Rtsne,umap,uwot |
| Suggests: | knitr,rmarkdown |
| Published: | 2025-01-31 |
| DOI: | 10.32614/CRAN.package.EmbedSOM |
| Author: | Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph] |
| Maintainer: | Mirek Kratochvil <exa.exa at gmail.com> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/exaexa/EmbedSOM |
| NeedsCompilation: | yes |
| Citation: | EmbedSOM citation info |
| Materials: | README |
| CRAN checks: | EmbedSOM results[issues need fixing before 2025-12-22] |