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primerTree: Visually Assessing the Specificity and Informativeness of PrimerPairs

Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products.

Version:1.1.0
Depends:directlabels,gridExtra, R (≥ 4.1.0)
Imports:ape,foreach,ggplot2, grid,httr,httr2,lubridate,plyr,reshape2,scales,stringr,XML
Published:2025-10-03
DOI:10.32614/CRAN.package.primerTree
Author:Jim Hester [aut], Matt Cannon [aut, cre]
Maintainer:Matt Cannon <matthewvc1 at gmail.com>
License:GPL-2
NeedsCompilation:yes
CRAN checks:primerTree results

Documentation:

Reference manual:primerTree.html ,primerTree.pdf

Downloads:

Package source: primerTree_1.1.0.tar.gz
Windows binaries: r-devel:primerTree_1.1.0.zip, r-release:primerTree_1.1.0.zip, r-oldrel:primerTree_1.1.0.zip
macOS binaries: r-release (arm64):primerTree_1.1.0.tgz, r-oldrel (arm64):primerTree_1.1.0.tgz, r-release (x86_64):primerTree_1.1.0.tgz, r-oldrel (x86_64):primerTree_1.1.0.tgz
Old sources: primerTree archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=primerTreeto link to this page.


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