nandb: Number and Brightness Image Analysis
Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.
| Version: | 2.1.1 |
| Depends: | R (≥ 3.1) |
| Imports: | assertthat,autothresholdr (≥ 1.3.11),BBmisc,checkmate (≥1.9.3),detrendr (≥ 0.6.12),dplyr,filesstrings (≥ 3.2),ggplot2,glue (≥ 1.3),ijtiff (≥ 2.2),magrittr (≥ 1.5),purrr,Rcpp (≥ 1.0.1),reshape2,rlang (≥ 0.3.3),stringr (≥1.4), utils,viridis,withr (≥ 2.1.0) |
| LinkingTo: | Rcpp (≥ 1.0.1) |
| Suggests: | abind,covr,gridExtra,knitr,magick,matrixStats (≥ 0.50),pacman,rmarkdown,spelling,testthat (≥ 2.1),tidyr |
| Published: | 2025-05-06 |
| DOI: | 10.32614/CRAN.package.nandb |
| Author: | Rory Nolan [aut, cre, cph], Luis Alvarez [ctb, cph], Sergi Padilla-Parra [ctb, ths, cph] |
| Maintainer: | Rory Nolan <rorynoolan at gmail.com> |
| BugReports: | https://github.com/rorynolan/nandb/issues |
| License: | BSD_3_clause + fileLICENSE |
| URL: | https://rorynolan.github.io/nandb/,https://github.com/rorynolan/nandb |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | nandb citation info |
| Materials: | README,NEWS |
| CRAN checks: | nandb results |
Documentation:
| Reference manual: | nandb.html ,nandb.pdf |
| Vignettes: | Batch mode (source,R code) Brightness timeseries (source,R code) Calculating brightness with single images (source,R code) |
Downloads:
| Package source: | nandb_2.1.1.tar.gz |
| Windows binaries: | r-devel:nandb_2.1.1.zip, r-release:nandb_2.1.1.zip, r-oldrel:nandb_2.1.1.zip |
| macOS binaries: | r-release (arm64):nandb_2.1.1.tgz, r-oldrel (arm64):nandb_2.1.1.tgz, r-release (x86_64):nandb_2.1.1.tgz, r-oldrel (x86_64):nandb_2.1.1.tgz |
| Old sources: | nandb archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=nandbto link to this page.