PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)
Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are described in Zahiri, J., et al.(2013) <doi:10.1016/j.ygeno.2013.05.006>, Saini, H., et al.(2016) <doi:10.17706/jsw.11.8.756-767>, Ding, S., et al.(2014) <doi:10.1016/j.biochi.2013.09.013>, Cheng, C.W., et al.(2008) <doi:10.1186/1471-2105-9-S12-S6>, Juan, E.Y., et al.(2009) <doi:10.1109/CISIS.2009.194>.
| Version: | 0.2.4 |
| Depends: | R (≥ 3.1.0) |
| Imports: | utils,gtools,infotheo,phonTools,dtt |
| Suggests: | testthat,spelling,waveslim,knitr,rmarkdown |
| Published: | 2022-01-04 |
| DOI: | 10.32614/CRAN.package.PSSMCOOL |
| Author: | Javad zahiri [aut], Alireza mohammadi [aut, cre], Saber mohammadi [aut] |
| Maintainer: | Alireza mohammadi <alireza691111 at gmail.com> |
| BugReports: | https://github.com/BioCool-Lab/PSSMCOOL/issues |
| License: | GPL-3 |
| URL: | https://github.com/BioCool-Lab/PSSMCOOL |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README |
| In views: | Omics |
| CRAN checks: | PSSMCOOL results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=PSSMCOOLto link to this page.