Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
| Version: | 1.1.0 |
| Depends: | R (≥ 4.0),ggplot2 (≥ 3.4.0) |
| Imports: | alakazam (≥ 1.3.0),dplyr (≥ 1.0.0),doParallel,foreach, graphics,gridExtra,gtools,iterators,lazyeval, parallel,rlang, stats,stringi,tidyr (≥ 1.1.0), utils |
| Suggests: | knitr,rmarkdown,testthat |
| Published: | 2023-10-10 |
| DOI: | 10.32614/CRAN.package.tigger |
| Author: | Daniel Gadala-Maria [aut], Susanna Marquez [aut, cre], Moriah Cohen [aut], Jason Vander Heiden [aut], Gur Yaari [aut], Steven Kleinstein [aut, cph] |
| Maintainer: | Susanna Marquez <susanna.marquez at yale.edu> |
| BugReports: | https://bitbucket.org/kleinstein/tigger/issues |
| License: | AGPL-3 |
| URL: | http://tigger.readthedocs.io |
| NeedsCompilation: | no |
| Citation: | tigger citation info |
| Materials: | README,NEWS |
| CRAN checks: | tigger results |