Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
| Version: | 3.2.4 |
| Depends: | R (≥ 4.0.0),Seurat (≥ 4.3.0.1) |
| Imports: | circlize,cli (≥ 3.2.0),cowplot,data.table,dplyr,forcats,ggbeeswarm,ggplot2,ggprism,ggrastr,ggrepel,glue, grDevices, grid,janitor,lifecycle,magrittr,Matrix (≥1.5.0),mcprogress, methods,paletteer,patchwork,pbapply,purrr,rlang (≥ 1.1.3),scales,scattermore (≥ 1.2),SeuratObject (≥ 5.0.0), stats,stringi,stringr,tibble,tidyr |
| Suggests: | BiocFileCache,ComplexHeatmap,dittoSeq,DropletUtils,ggpubr,hdf5r,knitr,Nebulosa,remotes,reticulate,rliger,rmarkdown,scuttle,tidyselect,qs,viridis |
| Published: | 2025-12-11 |
| DOI: | 10.32614/CRAN.package.scCustomize |
| Author: | Samuel Marsh [aut, cre], Ming Tang [ctb], Velina Kozareva [ctb], Lucas Graybuck [ctb], Zoe Clarke [ctb] |
| Maintainer: | Samuel Marsh <sccustomize at gmail.com> |
| BugReports: | https://github.com/samuel-marsh/scCustomize/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/samuel-marsh/scCustomize,https://samuel-marsh.github.io/scCustomize/,https://doi.org/10.5281/zenodo.5706431 |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | scCustomize results |