Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
| Version: | 1.3.6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp,metap,magrittr,dplyr,tibble,stringr,ggplot2,tidyr,glue,pheatmap, tools,readr, parallel,R.utils |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | testthat,knitr,rmarkdown |
| Published: | 2025-10-01 |
| DOI: | 10.32614/CRAN.package.CB2 |
| Author: | Hyun-Hwan Jeong [aut, cre] |
| Maintainer: | Hyun-Hwan Jeong <hyunhwanjeong at icloud.com> |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | yes |
| Materials: | README |
| In views: | Omics |
| CRAN checks: | CB2 results |
| Reference manual: | CB2.html ,CB2.pdf |
| Vignettes: | Handling the input matrix in CB2 (source,R code) CB2 Tutorial (source,R code) |
| Package source: | CB2_1.3.6.tar.gz |
| Windows binaries: | r-devel:CB2_1.3.6.zip, r-release:CB2_1.3.6.zip, r-oldrel:CB2_1.3.6.zip |
| macOS binaries: | r-release (arm64):CB2_1.3.6.tgz, r-oldrel (arm64):CB2_1.3.6.tgz, r-release (x86_64):CB2_1.3.6.tgz, r-oldrel (x86_64):CB2_1.3.6.tgz |
| Old sources: | CB2 archive |
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