secsse: Several Examined and Concealed States-Dependent Speciation andExtinction
Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.
| Version: | 3.5.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | utils,DDD (≥ 5.0),ape,geiger,Rcpp (≥ 1.0.10),RcppParallel,ggplot2,tibble,rlang,treestats |
| LinkingTo: | Rcpp,RcppParallel,BH (≥ 1.81.0-1) |
| Suggests: | diversitree,phytools,testthat,subplex,knitr,rmarkdown |
| Published: | 2025-07-24 |
| DOI: | 10.32614/CRAN.package.secsse |
| Author: | Leonel Herrera Alsina [aut], Paul van Els [aut], Thijs Janzen [ctb], Hanno Hildenbrandt [ctb], Pedro Santos Neves [ctb], Rampal S. Etienne [cre, aut] |
| Maintainer: | Rampal S. Etienne <r.s.etienne at rug.nl> |
| BugReports: | https://github.com/rsetienne/secsse/issues |
| License: | GPL (≥ 3) | fileLICENSE |
| Copyright: | see fileCOPYRIGHTS |
| URL: | https://rsetienne.github.io/secsse/,https://github.com/rsetienne/secsse |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Citation: | secsse citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | secsse results |
Documentation:
Downloads:
| Package source: | secsse_3.5.0.tar.gz |
| Windows binaries: | r-devel:secsse_3.5.0.zip, r-release:secsse_3.5.0.zip, r-oldrel:secsse_3.5.0.zip |
| macOS binaries: | r-release (arm64):secsse_3.5.0.tgz, r-oldrel (arm64):secsse_3.5.0.tgz, r-release (x86_64):secsse_3.5.0.tgz, r-oldrel (x86_64):secsse_3.5.0.tgz |
| Old sources: | secsse archive |
Linking:
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