Movatterモバイル変換

FastRet 1.1.4

• Added a cache cleanup handler that gets registered viareg.finalizer() upon package loading to ensure that thecache directory is removed if it doesn’t contain any files that shouldpersist between R sessions.
• Added an article about installation details incl. a troubleshootingsection
• Improved function docs
• Improved examples by removingdonttest blocks
• Improved examples & tests by using smaller example datasets toreduce runtime

FastRet 1.1.3

• Fixed issues mentioned by CRAN reviewer after initial submission ofFastRet (v1.1.2):
  • Comment 1:Please do not modify the .GlobalEnv.This is not allowed by the CRAN policies. -> R/patch.R
  • Solution: Movedpatch.R from theR folder tomisc/scripts, which is excludedfrom the package build using.Rbuildignore. The file isconditionally sourced by the private functionstart_gui_in_devmode() if available, allowing its useduring development without including it in the package.
  • Comment 2: *Please add to .Rd files regardingexported methods and explain the functions’ results in thedocumentation. Please write about the structure of the output (class)and also what the output means. (If a function does not return a value,document that too, e.g., or similar) -> Missing Rd-tags:adjust_frm.Rd: , analyzeCDNames.Rd: , getCDs.Rd: ,getCDsFor1Molecule.Rd: , read_rpadj_xlsx.Rd:
  • Solution: Added\value tags to thementioned.Rd files describing the functions’ returnvalues.
  • Comment 3:If there are references describingthe methods in your package, please add these in the description fieldof your DESCRIPTION file in the form authors (year) <doi:…>authors (year, ISBN:…) or if those are not available: <https:…>with no space after ‘doi:’, ‘https:’ and angle brackets forauto-linking. (If you want to add a title as well please put it inquotes: “Title”)
  • Solution: AddedBonini et al. (2020)doi:10.1021/acs.analchem.9b05765 as reference tothe description part of the DESCRIPTION file, listing it asRelatedwork. This reference is used in the documentation forread_retip_hilic_data() andram_cache. Noadditional references are used in the package documentation.
• Added Fadi Fadil as a contributor. Fadi measured the exampledatasets shipped with FastRet.
• Added ORCID IDs for contributors as described inCRAN’schecklist for submissions.

FastRet 1.1.2

• Wrapped examples ofread_rp_xlsx() andread_rpadj_xlsx() intodonttest to preventnoteExamples with CPU time > 2.5 times elapsed time: .... Bynow I’m pretty sure the culprit is thexlsx package, whichuses a java process for reading the file. Maybe we should switch toopenxlsx or readxl in the future.

FastRet 1.1.1

• Improved examples ofpreprocess_data() to prevent noteExamples with CPU time > 2.5 times elapsed time: preprocess_data (CPU=2.772, elapsed=0.788).

FastRet 1.1.0

• Added RAM caching togetCDs()

FastRet 1.0.3

• Initial CRAN Submission.

  Rejected because the following examples caused at least one of thefollowing notes on the CRAN testing machines: CPU time >5s,CPU time > 2.5 times elapsedtime. In this context,CPUtimeis calculated as the sum of the easureduserandsystem`times.

  function	user	system	elapsed	ratio
  check_lm_suitability	5.667	0.248	2.211	2.675
  predict.frm	2.477	0.112	0.763	3.393
  getCDs	2.745	0.089	0.961	2.949