Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
| Version: | 2.2.0 |
| Depends: | R (≥ 3.5) |
| Imports: | digest,dplyr (≥ 0.8.3),ezcox,forcats,ggplot2 (≥ 3.2.0),ggpubr (≥ 0.2),httr,magrittr (≥ 1.5),ppcor,psych,purrr,rlang,shiny (≥ 1.3.2), stats,stringr,tibble (≥ 2.1.3),tidyr,UCSCXenaTools, utils |
| Suggests: | covr (≥ 3.2.1),cowplot,DT (≥ 0.5),funkyheatmap,furrr,future,ggrepel,ggstatsplot,glue,knitr,pacman,plotly,plyr,RColorBrewer (≥ 1.1.2),readr,rmarkdown,Rtsne,scales,survival,survminer,testthat (≥ 2.0.1),umap |
| Published: | 2025-08-01 |
| DOI: | 10.32614/CRAN.package.UCSCXenaShiny |
| Author: | Shixiang Wang [aut, cre], Shensuo Li [aut], Yi Xiong [aut], Longfei Zhao [aut], Kai Gu [aut], Yin Li [aut], Fei Zhao [aut] |
| Maintainer: | Shixiang Wang <w_shixiang at 163.com> |
| BugReports: | https://github.com/openbiox/UCSCXenaShiny/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/openbiox/UCSCXenaShiny,https://openbiox.github.io/UCSCXenaShiny/ |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | UCSCXenaShiny results |