MicrobTiSDA: Microbiome Time-Series Data Analysis
Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5) |
| Imports: | caret,cluster,dplyr,ggdendro,ggplot2,ggraph,MASS,mgcv,plyr,pracma,randomForest,reshape2,scales, splines, stats,tibble,tidygraph,tidyr,vegan,visNetwork |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2025-09-22 |
| DOI: | 10.32614/CRAN.package.MicrobTiSDA |
| Author: | Shijia Li [aut, cre] |
| Maintainer: | Shijia Li <s.li2 at uva.nl> |
| BugReports: | https://github.com/Lishijiagg/MicrobTiSDA/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/Lishijiagg/MicrobTiSDA |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MicrobTiSDA results |
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