A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
| Version: | 0.9.2 |
| Depends: | R (≥ 3.0.0),aroma.affymetrix (≥ 2.14.0) |
| Imports: | MASS,R.methodsS3 (≥ 1.7.0),R.oo (≥ 1.23.0),R.utils (≥2.1.0),matrixStats (≥ 0.50.0),R.filesets (≥ 2.9.0),aroma.core (≥ 2.14.0) |
| Suggests: | DNAcopy |
| Published: | 2025-08-19 |
| DOI: | 10.32614/CRAN.package.ACNE |
| Author: | Maria Ortiz [aut], Henrik Bengtsson [aut, cre, cph], Angel Rubio [aut] |
| Maintainer: | Henrik Bengtsson <henrikb at braju.com> |
| BugReports: | https://github.com/HenrikBengtsson/ACNE/issues |
| License: | LGPL-2.1 |LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: | https://github.com/HenrikBengtsson/ACNE |
| NeedsCompilation: | no |
| Citation: | ACNE citation info |
| Materials: | README,NEWS |
| In views: | Omics |
| CRAN checks: | ACNE results |