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staRdom: PARAFAC Analysis of EEMs from DOM

'This is a user-friendly way to run a parallel factor (PARAFAC) analysis (Harshman, 1971) <doi:10.1121/1.1977523> on excitation emission matrix (EEM) data from dissolved organic matter (DOM) samples (Murphy et al., 2013) <doi:10.1039/c3ay41160e>. The analysis includes profound methods for model validation. Some additional functions allow the calculation of absorbance slope parameters and create beautiful plots.'

Version:1.1.30
Depends:R (≥ 4.4.0),ggplot2 (≥ 3.5.1),eemR (≥ 1.0.1), parallel (≥ 4.4.0)
Imports:dplyr (≥ 1.1.4),tidyr (≥ 1.3.1),stringr (≥ 1.5.1),pracma (≥ 2.4.4),zoo (≥ 1.8-12),tibble (≥ 3.2.1),multiway (≥1.0-6),GGally (≥ 2.2.1), graphics (≥ 4.4.0),doParallel (≥1.0.16),drc (≥ 3.0-1),foreach (≥ 1.5.1),data.table (≥1.16.2),matrixStats (≥ 1.4.1),MBA (≥ 0.1-2),cdom (≥0.1.0),R.matlab (≥ 3.7.0),readr (≥ 2.1.5),gtools (≥3.9.5),viridisLite (≥ 0.4.2)
Suggests:plotly (≥ 4.10.4),xlsx (≥ 0.6.5),knitr (≥ 1.48.0),kableExtra (≥ 1.4.0),askpass (≥ 1.2.1),httr (≥ 1.4.7),rmarkdown (≥ 2.28.0),ggrepel (≥ 0.9.6)
Published:2025-09-03
DOI:10.32614/CRAN.package.staRdom
Author:Matthias Pucher [aut, cre], Daniel Graeber [aut, ctb], Stefan Preiner [ctb], Renata Pinto [ctb]
Maintainer:Matthias Pucher <matthias.pucher at gmx.net>
BugReports:https://github.com/MatthiasPucher/staRdom/issues
License:AGPL-3
URL:https://cran.r-project.org/package=staRdom
NeedsCompilation:no
Citation:staRdom citation info
Materials:README
CRAN checks:staRdom results

Documentation:

Reference manual:staRdom.html ,staRdom.pdf
Vignettes:Correcting raw data, calculating peaks and indices in EEMS and absorbance (slope) parameters (source,R code)
PARAFAC analysis of EEM data to separate DOM components in R (source,R code)

Downloads:

Package source: staRdom_1.1.30.tar.gz
Windows binaries: r-devel:staRdom_1.1.30.zip, r-release:staRdom_1.1.30.zip, r-oldrel:staRdom_1.1.30.zip
macOS binaries: r-release (arm64):staRdom_1.1.30.tgz, r-oldrel (arm64):staRdom_1.1.30.tgz, r-release (x86_64):staRdom_1.1.30.tgz, r-oldrel (x86_64):staRdom_1.1.30.tgz
Old sources: staRdom archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=staRdomto link to this page.


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