locuszoomr: Gene Locus Plot with Gene Annotations
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots <doi:10.1093/bioadv/vbaf006>.
| Version: | 0.3.8 |
| Depends: | R (≥ 3.5) |
| Imports: | AnnotationFilter,BiocGenerics,cowplot,dplyr,ensembldb,GenomeInfoDb,GenomicRanges,gggrid,ggplot2,ggrepel, graphics, grDevices, grid,IRanges,LDlinkR,memoise,plotly,rlang,rtracklayer,zoo |
| Suggests: | AnnotationHub,EnsDb.Hsapiens.v75,knitr,rmarkdown |
| Published: | 2025-03-03 |
| DOI: | 10.32614/CRAN.package.locuszoomr |
| Author: | Myles Lewis [aut, cre] |
| Maintainer: | Myles Lewis <myles.lewis at qmul.ac.uk> |
| BugReports: | https://github.com/myles-lewis/locuszoomr/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/myles-lewis/locuszoomr |
| NeedsCompilation: | no |
| Language: | en-gb |
| Citation: | locuszoomr citation info |
| Materials: | README,NEWS |
| CRAN checks: | locuszoomr results |
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