landsepi: Landscape Epidemiology and Evolution
A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies. It is based on a spatial geometry for describing the landscape and allocation of different cultivars, a dispersal kernel for the dissemination of the pathogen, and a SEIR ('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step. It provides a useful tool to assess the performance of a wide range of deployment options with respect to their epidemiological, evolutionary and economic outcomes. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
| Version: | 1.5.2 |
| Depends: | R (≥ 4.2.0),sp (≥ 1.0-17) |
| Imports: | methods, utils, stats (≥ 3.0.2), grDevices (≥ 3.0.0), graphics (≥ 3.0.0), parallel,Rcpp (≥ 0.9.0),Matrix (≥1.3-0),mvtnorm,fields,splancs,sf,DBI,RSQLite,foreach,doParallel,deSolve |
| LinkingTo: | Rcpp,testthat |
| Suggests: | testthat (≥ 3.0.0),shiny,shinyjs,DT,knitr,rmarkdown |
| Published: | 2025-07-31 |
| DOI: | 10.32614/CRAN.package.landsepi |
| Author: | Loup Rimbaud [aut], Marta Zaffaroni [aut], Jean-François Rey [aut, cre], Julien Papaix [aut], Jean-Loup Gaussen [ctb], Manon Couty [ctb] |
| Maintainer: | Jean-François Rey <jean-francois.rey at inrae.fr> |
| BugReports: | https://forge.inrae.fr/landsepi/landsepi/-/issues |
| License: | GPL-2 |GPL-3 | fileLICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
| URL: | https://landsepi.pages-forge.inrae.fr/landsepi,https://forge.inrae.fr/landsepi/landsepi |
| NeedsCompilation: | yes |
| SystemRequirements: | C++, gsl |
| Citation: | landsepi citation info |
| Materials: | NEWS |
| In views: | Agriculture |
| CRAN checks: | landsepi results |
Documentation:
Downloads:
| Package source: | landsepi_1.5.2.tar.gz |
| Windows binaries: | r-devel:landsepi_1.5.2.zip, r-release:landsepi_1.5.2.zip, r-oldrel:landsepi_1.5.2.zip |
| macOS binaries: | r-release (arm64):landsepi_1.5.2.tgz, r-oldrel (arm64):landsepi_1.5.2.tgz, r-release (x86_64):landsepi_1.5.2.tgz, r-oldrel (x86_64):landsepi_1.5.2.tgz |
| Old sources: | landsepi archive |
Linking:
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