bigPLScox: Partial Least Squares for Cox Models with Big Matrices
Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models for big data. Provides a Partial Least Squares (PLS) algorithm adapted to Cox proportional hazards models that works with 'bigmemory' matrices without loading the entire dataset in memory. Also implements a gradient-descent based solver for Cox proportional hazards models that works directly on 'bigmemory' matrices. Bertrand and Maumy (2023) <https://hal.science/hal-05352069>, and <https://hal.science/hal-05352061> highlighted fitting and cross-validating PLS-based Cox models to censored big data.
| Version: | 0.8.1 |
| Depends: | R (≥ 4.0.0) |
| Imports: | bigmemory,bigalgebra,bigSurvSGD,caret,doParallel,foreach,kernlab, methods,Rcpp,risksetROC,rms,sgPLS,survAUC,survcomp,survival |
| LinkingTo: | BH,Rcpp,RcppArmadillo,bigmemory |
| Suggests: | bench,knitr,plsRcox,mvtnorm,readr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2025-11-18 |
| DOI: | 10.32614/CRAN.package.bigPLScox |
| Author: | Frederic Bertrand [cre, aut], Myriam Maumy-Bertrand [aut] |
| Maintainer: | Frederic Bertrand <frederic.bertrand at lecnam.net> |
| BugReports: | https://github.com/fbertran/bigPLScox/issues |
| License: | GPL-3 |
| URL: | https://fbertran.github.io/bigPLScox/,https://github.com/fbertran/bigPLScox |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Classification/MSC: | 62N01,62N02,62N03,62N99 |
| Citation: | bigPLScox citation info |
| Materials: | README,NEWS |
| CRAN checks: | bigPLScox results |
Documentation:
| Reference manual: | bigPLScox.html ,bigPLScox.pdf |
| Vignettes: | Benchmarking bigPLScox (source,R code) Fast big-memory workflows with bigPLScox (source,R code) Getting started with bigPLScox (source,R code) |
Downloads:
| Package source: | bigPLScox_0.8.1.tar.gz |
| Windows binaries: | r-devel:bigPLScox_0.8.1.zip, r-release:bigPLScox_0.8.1.zip, r-oldrel:bigPLScox_0.8.1.zip |
| macOS binaries: | r-release (arm64):bigPLScox_0.6.0.tgz, r-oldrel (arm64):bigPLScox_0.6.0.tgz, r-release (x86_64):bigPLScox_0.8.1.tgz, r-oldrel (x86_64):bigPLScox_0.8.1.tgz |
| Old sources: | bigPLScox archive |
Linking:
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