Movatterモバイル変換

BREADR

The goal of BREADR is to provide an easy-to-use method for estimatingdegrees of relatedness (up to the second degree) for extremelylow-coverage data. BREADR also allows users to quantify and visualisethe level of confidence in the estimated degrees of relatedness.

The method requires Eigenstrat files (an ind, geno and snp file) tobegin, allowing the user to account for DNA deamination when genotypingtheir data.

Further information can be found at theBREADR website.

Installation

To install, you can use the usual

install.packages("BREADR")

You can install the development version of BREADR fromGitHub with:

# install.packages("remotes")remotes::install_github("jonotuke/BREADR")

Also to ensure that BREADR install correctly, we suggest installingthe following packages

• Matrix,
• data.table,
• dplyr,
• forcats,
• ggplot2,
• ggpubr,
• grDevices,
• magrittr,
• MASS,
• matrixStats,
• purrr,
• readr,
• stringr and
• tibble.

Contributing to BREADR

Please note thatBREADR is work in progress! If you areinterested in the project and want to know more please feel free tocontact Jono Tuke(simon.tuke@adelaide.edu.au).If you find a bug or would like to see new or improved features, pleaseopen an issue on theGitHub repository.